Results generated by running the recipe.
Parameters used during the run:
Read 2000 spots for SRR3191544 Written 2000 spots for SRR3191544 Read 2000 spots for SRR3191545 Written 2000 spots for SRR3191545 Read 2000 spots for SRR3191542 Written 2000 spots for SRR3191542 Read 2000 spots for SRR3191543 Written 2000 spots for SRR3191543 Rejected 2000 READS because READLEN < 1 Read 2000 spots for SRR3194428 Written 2000 spots for SRR3194428 Analysis complete for SRR3191542_1.fastq Analysis complete for SRR3191542_2.fastq Analysis complete for SRR3191543_1.fastq Analysis complete for SRR3191543_2.fastq Analysis complete for SRR3191544_1.fastq Analysis complete for SRR3191544_2.fastq Analysis complete for SRR3191545_1.fastq Analysis complete for SRR3191545_2.fastq Analysis complete for SRR3194428_1.fastq
+ PRJN=PRJNA313294 + RUNS=5 + READS=2000 + esearch -db sra -query PRJNA313294 + efetch -format runinfo + cat runinfo.csv + cut -f 1 -d , + head -5 + grep SRR + mkdir -p reads + cat runids.txt + parallel fastq-dump --split-files -X 2000 -outdir reads '{}' + mkdir -p fastqc + fastqc -o fastqc reads/SRR3191542_1.fastq reads/SRR3191542_2.fastq reads/SRR3191543_1.fastq reads/SRR3191543_2.fastq reads/SRR3191544_1.fastq reads/SRR3191544_2.fastq reads/SRR3191545_1.fastq reads/SRR3191545_2.fastq reads/SRR3194428_1.fastq Started analysis of SRR3191542_1.fastq Approx 50% complete for SRR3191542_1.fastq Approx 100% complete for SRR3191542_1.fastq Started analysis of SRR3191542_2.fastq Approx 50% complete for SRR3191542_2.fastq Approx 100% complete for SRR3191542_2.fastq Started analysis of SRR3191543_1.fastq Approx 50% complete for SRR3191543_1.fastq Approx 100% complete for SRR3191543_1.fastq Started analysis of SRR3191543_2.fastq Approx 50% complete for SRR3191543_2.fastq Approx 100% complete for SRR3191543_2.fastq Started analysis of SRR3191544_1.fastq Approx 45% complete for SRR3191544_1.fastq Approx 100% complete for SRR3191544_1.fastq Started analysis of SRR3191544_2.fastq Approx 50% complete for SRR3191544_2.fastq Approx 100% complete for SRR3191544_2.fastq Started analysis of SRR3191545_1.fastq Approx 45% complete for SRR3191545_1.fastq Approx 100% complete for SRR3191545_1.fastq Started analysis of SRR3191545_2.fastq Approx 50% complete for SRR3191545_2.fastq Approx 100% complete for SRR3191545_2.fastq Started analysis of SRR3194428_1.fastq Approx 45% complete for SRR3194428_1.fastq Approx 100% complete for SRR3194428_1.fastq + rm -f fastqc/SRR3191542_1_fastqc.zip fastqc/SRR3191542_2_fastqc.zip fastqc/SRR3191543_1_fastqc.zip fastqc/SRR3191543_2_fastqc.zip fastqc/SRR3191544_1_fastqc.zip fastqc/SRR3191544_2_fastqc.zip fastqc/SRR3191545_1_fastqc.zip fastqc/SRR3191545_2_fastqc.zip fastqc/SRR3194428_1_fastqc.zip