This recipe compares alignment before and after QC using two different tools, bwa and bowtie2
This recipe demonstrates the use of BLAST to identify a viral sequence.
This recipe demonstrates variant call generation for several samples at once.
This recipe performs data quality control on FASTQ data downloaded from SRA.
This recipe demonstrates the utility of blast databases for manipulating sequences.
This recipe demonstrates the use of the BWA short read aligner to create a BAM file.
This recipe demonstrates the use of the BOWTIE short read aligner to create a BAM file.
This recipe demonstrates variant call generation from sequencing deposited at SRA
This recipe demonstrates a bacterial variant caller with minimap2 and bcftools
This recipe performs an RNA Seq analysis of the Zika data using an alignment based method
This recipe downloads sequencing data from an NCBI project.
This recipe performs an RNA Seq analysis of the Zika data using a classification based method
This recipe produces pairwise alignments with different algorithms.
This recipe demonstrates variant calling using freebayes and simulated data.
This recipe aligns simulated reads with a short read aligner.
This recipe demonstrates the effects that large scale genomic variations have on the alignments.
This recipe performs an RNA Seq analysis of control samples using an alignment based method
This recipe demonstrates variant call generation using bcftools and simulated data.
This recipe performs an RNA Seq analysis of spiked control samples using an alignment based method
This recipe generates a heatmap for differential expression data
This recipe performs an RNA Seq analysis of control samples using a classification based method.
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